Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02301.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3993
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:562 original size:9 final size:9

Alignment explanation


    Indices: 548--572  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        538 ATAAAAGATT

                     
        548 CATCACCAC
          1 CATCACCAC

                     
        557 CATCACCAC
          1 CATCACCAC

                   
        566 CATCACC
          1 CATCACC

        573 TACACCACCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.32, C:0.56, G:0.00, T:0.12


Consensus pattern (9 bp):   
CATCACCAC
Done.