Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02309.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33


Found at i:497 original size:24 final size:24

Alignment explanation


    Indices: 470--520  Score: 75
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        460 CGAGCATCCC

                              *     
        470 TCCTGATATTCCACCACCTAAAAG
          1 TCCTGATATTCCACCACCGAAAAG

                         *        * 
        494 TCCTGATATTCCATCACCGAAAGG
          1 TCCTGATATTCCACCACCGAAAAG

               
        518 TCC
          1 TCC

        521 ATCCTTCGTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.33, G:0.12, T:0.25


Consensus pattern (24 bp):   
TCCTGATATTCCACCACCGAAAAG
Done.