Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02315.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1743
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26


Found at i:1628 original size:8 final size:8

Alignment explanation


    Indices: 1615--1645  Score: 62
    Period size: 8  Copynumber: 3.9  Consensus size: 8

       1605 TAATATAAAA

                    
       1615 AATCGTAT
          1 AATCGTAT

                    
       1623 AATCGTAT
          1 AATCGTAT

                    
       1631 AATCGTAT
          1 AATCGTAT

                   
       1639 AATCGTA
          1 AATCGTA

       1646 CAATTTTCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (8 bp):   
AATCGTAT

Done.