Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02339.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1942
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35


Found at i:1586 original size:19 final size:20

Alignment explanation


    Indices: 1536--1588  Score: 56
    Period size: 19  Copynumber: 2.7  Consensus size: 20

       1526 AATTTTAGTA

                            **   
       1536 ATTATATTTTTAAAATTTATT
          1 ATTATATTTTT-AAATAAATT

                   *            
       1557 ATTATA-ATTTAAATAAATT
          1 ATTATATTTTTAAATAAATT

                          
       1576 -TTATATTTTTAAA
          1 ATTATATTTTTAAA

       1589 ATTTTAATTA


Statistics
Matches: 27,  Mismatches: 4, Indels: 4
        0.77            0.11        0.11

Matches are distributed among these distances:
  18    5  0.19
  19   13  0.48
  20    3  0.11
  21    6  0.22

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (20 bp):   
ATTATATTTTTAAATAAATT
Done.