Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02354.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2900
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29


Found at i:2110 original size:4 final size:4

Alignment explanation


    Indices: 2101--2145  Score: 90
    Period size: 4  Copynumber: 11.2  Consensus size: 4

       2091 TATCTAGTGG

                                                                    
       2101 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
          1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T

       2146 ATTCAAGTGT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   41  1.00

ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51


Consensus pattern (4 bp):   
TGTA

Done.