Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02370.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2048
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29


Found at i:1097 original size:57 final size:56

Alignment explanation


    Indices: 1024--1218  Score: 241
    Period size: 57  Copynumber: 3.4  Consensus size: 56

       1014 TAATACTAAC

                    *                              *                
       1024 AAAGGGAAGTCAAGTTCGGTTGTTAACGGGTTGGAGGATTCAGGAAAATGGGTCAA
          1 AAAGGGAAATCAAGTTCGGTTGTTAACGGGTTGGAGGATCCAGGAAAATGGGTCAA

                                                                  *  
       1080 AAAGGCGAAATCAAGTTCGGTTGTTAACGGGTTGGAGGATCCAGGAAAATGGGTTAA
          1 AAAGG-GAAATCAAGTTCGGTTGTTAACGGGTTGGAGGATCCAGGAAAATGGGTCAA

                           *           *  *  *         *               
       1137 AAAGGGAAAATCAAGCTCGGTTGTTAATGGATTTGAGGATCCGGGGAAAAT-GG-CAAA
          1 AAAGGG-AAATCAAGTTCGGTTGTTAACGGGTTGGAGGATCC-AGGAAAATGGGTC-AA

                           *   *     
       1194 AAAGGGAAAATCAAGCTCGATTGTT
          1 AAAGGG-AAATCAAGTTCGGTTGTT

       1219 GGATTTGAGG


Statistics
Matches: 125,  Mismatches: 10, Indels: 7
        0.88            0.07        0.05

Matches are distributed among these distances:
  56    6  0.05
  57  112  0.90
  58    7  0.06

ACGTcount: A:0.35, C:0.10, G:0.32, T:0.23


Consensus pattern (56 bp):   
AAAGGGAAATCAAGTTCGGTTGTTAACGGGTTGGAGGATCCAGGAAAATGGGTCAA
Done.