Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02396.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1208
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:404 original size:7 final size:7

Alignment explanation


    Indices: 392--418  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        382 AGAAATCGAA

                   
        392 CTTGCAC
          1 CTTGCAC

                   
        399 CTTGCAC
          1 CTTGCAC

                   
        406 CTTGCAC
          1 CTTGCAC

                  
        413 CTTGCA
          1 CTTGCA

        419 ACGAAAATGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.15, C:0.41, G:0.15, T:0.30


Consensus pattern (7 bp):   
CTTGCAC

Done.