Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02322.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3587
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30


Found at i:794 original size:133 final size:133

Alignment explanation


    Indices: 551--818  Score: 473
    Period size: 133  Copynumber: 2.0  Consensus size: 133

        541 CTGCATATCT

                        *               *              *                     
        551 CAGCCTAAATATTTCAGGAATGGTAGTTCTGGATTCCCCAGAGTTTGAAAGTGATTGTAAATTAT
          1 CAGCCTAAATATCTCAGGAATGGTAGTTATGGATTCCCCAGAGCTTGAAAGTGATTGTAAATTAT

                     *                              *                        
        616 TTGTGTTAATTGTTTTTCTTTTGGTTTGGATTTGCATACTGGGGCAAGAATGTCTCTTCTTTTAC
         66 TTGTGTTAAATGTTTTTCTTTTGGTTTGGATTTGCATACTAGGGCAAGAATGTCTCTTCTTTTAC

               
        681 GAG
        131 GAG

                                                                             
        684 CAGCCTAAATATCTCAGGAATGGTAGTTATGGATTCCCCAGAGCTTGAAAGTGATTGTAAATTAT
          1 CAGCCTAAATATCTCAGGAATGGTAGTTATGGATTCCCCAGAGCTTGAAAGTGATTGTAAATTAT

                                         *                                  *
        749 TTGTGTTAAATGTTTTTCTTTTGGTTTGGGTTTGCATACTAGGGCAAGAATGTCTCTTCTTTTAT
         66 TTGTGTTAAATGTTTTTCTTTTGGTTTGGATTTGCATACTAGGGCAAGAATGTCTCTTCTTTTAC

               
        814 GAG
        131 GAG

              
        817 CA
          1 CA

        819 CATTGTGCAT


Statistics
Matches: 128,  Mismatches: 7, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 133  128  1.00

ACGTcount: A:0.24, C:0.13, G:0.22, T:0.40


Consensus pattern (133 bp):   
CAGCCTAAATATCTCAGGAATGGTAGTTATGGATTCCCCAGAGCTTGAAAGTGATTGTAAATTAT
TTGTGTTAAATGTTTTTCTTTTGGTTTGGATTTGCATACTAGGGCAAGAATGTCTCTTCTTTTAC
GAG
Done.