Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02410.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3049
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.33


Found at i:960 original size:46 final size:46

Alignment explanation


    Indices: 902--1029  Score: 184
    Period size: 46  Copynumber: 2.8  Consensus size: 46

        892 ATTTGGGCAT

                *                                  *   * *
        902 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGT
          1 CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC

            *                                             
        948 TCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
          1 CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC

                *  **                           
        994 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
          1 CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGG

       1030 GCGGGTTACA


Statistics
Matches: 73,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  46   73  1.00

ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32


Consensus pattern (46 bp):   
CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Done.