Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02416.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2758
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Found at i:861 original size:21 final size:21

Alignment explanation


    Indices: 821--861  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        811 CCAACTGTAT

                   *     *       
        821 ATTTGGCTAATGATCGACCTA
          1 ATTTGGCAAATGAACGACCTA

                           *    
        842 ATTTGGCAAATGAACTACCT
          1 ATTTGGCAAATGAACGACCT

        862 CTAATGTCTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Consensus pattern (21 bp):   
ATTTGGCAAATGAACGACCTA
Done.