Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02423.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5178
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28


Found at i:368 original size:39 final size:39

Alignment explanation


    Indices: 312--420  Score: 146
    Period size: 39  Copynumber: 2.8  Consensus size: 39

        302 CGCCCTCCTC

                      *                *   *     * 
        312 CTCCTTCATCCACTCCTCCAATCAGGCGCTCGAGTTATA
          1 CTCCTTCATCTACTCCTCCAATCAGGCCCTCCAGTTACA

                        *                          
        351 CTCCTTCATCTAGTCCTCCAATCAGGCCCTCCAGTTACA
          1 CTCCTTCATCTACTCCTCCAATCAGGCCCTCCAGTTACA

                 *        *          *     
        390 CTCCTCCATCTACTACTCCAATCAGACCCTC
          1 CTCCTTCATCTACTCCTCCAATCAGGCCCTC

        421 AAGGGTAAAT


Statistics
Matches: 61,  Mismatches: 9, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  39   61  1.00

ACGTcount: A:0.21, C:0.42, G:0.09, T:0.28


Consensus pattern (39 bp):   
CTCCTTCATCTACTCCTCCAATCAGGCCCTCCAGTTACA
Done.