Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02435.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3751
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:1649 original size:33 final size:33

Alignment explanation


    Indices: 1598--1688  Score: 155
    Period size: 33  Copynumber: 2.8  Consensus size: 33

       1588 TTTCTTCTTG

                       *                     
       1598 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
          1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC

                    *    *                   
       1631 ACATTCCAACTCCCGTCCAGCAACCAAACACTC
          1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC

                                     
       1664 ACATTCCAGCTCCTGTCCAGCAACC
          1 ACATTCCAGCTCCTGTCCAGCAACC

       1689 TGAAACAGAG


Statistics
Matches: 53,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   53  1.00

ACGTcount: A:0.31, C:0.43, G:0.09, T:0.18


Consensus pattern (33 bp):   
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Done.