Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02452.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1770
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:605 original size:73 final size:73

Alignment explanation


    Indices: 506--644  Score: 208
    Period size: 73  Copynumber: 1.9  Consensus size: 73

        496 TATATATTTC

                   *      *    *                                     *       
        506 TATATATTCGATTTTGAGTGTCTTCTTCC-ATGAATTTTAAGGATCTTTGGAGGGCCGTATCTCA
          1 TATATATCCGATTTCGAGTATCTTCTTCCTA-GAATTTTAAGGATCTTTGGAGGGCCATATCTCA

                     
        570 ATGAGGGTA
         65 ATGAGGGTA

                                 *                                *          
        579 TATATATCCGATTTCGAGTATGTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGTCATATCTCAA
          1 TATATATCCGATTTCGAGTATCTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGCCATATCTCAA

             
        644 T
         66 T

        645 ATACGAACAC


Statistics
Matches: 59,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  73   58  0.98
  74    1  0.02

ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40


Consensus pattern (73 bp):   
TATATATCCGATTTCGAGTATCTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGCCATATCTCAA
TGAGGGTA
Done.