Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02324.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 228

Length: 381
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36


Found at i:80 original size:11 final size:11

Alignment explanation


    Indices: 64--89  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

         54 TCAATCTCTA

                       
         64 TTTTGAAGAAT
          1 TTTTGAAGAAT

                       
         75 TTTTGAAGAAT
          1 TTTTGAAGAAT

                
         86 TTTT
          1 TTTT

         90 CTTTTGAGCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54


Consensus pattern (11 bp):   
TTTTGAAGAAT
Done.