Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02329.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26


Found at i:2004 original size:4 final size:4

Alignment explanation


    Indices: 1995--2050  Score: 58
    Period size: 4  Copynumber: 14.0  Consensus size: 4

       1985 TAGGTAGCAT

                         *  *    *                          *    *     
       1995 CATA CATA CATG CTTA CGTA CATA CATA CATA CATA CATG CATG CATA
          1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA

            *        
       2043 TATA CATA
          1 CATA CATA

       2051 TATATATGTA


Statistics
Matches: 43,  Mismatches: 9, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   4   43  1.00

ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29


Consensus pattern (4 bp):   
CATA

Found at i:2032 original size:16 final size:16

Alignment explanation


    Indices: 1991--2050  Score: 68
    Period size: 16  Copynumber: 3.8  Consensus size: 16

       1981 AGATTAGGTA

                            
       1991 GCAT-CATACATACAT
          1 GCATACATACATACAT

              *   *         
       2006 GCTTACGTACATACAT
          1 GCATACATACATACAT

            *           *   
       2022 ACATACATACATGCAT
          1 GCATACATACATACAT

                 *       
       2038 GCATATATACATA
          1 GCATACATACATA

       2051 TATATATGTA


Statistics
Matches: 35,  Mismatches: 9, Indels: 1
        0.78            0.20        0.02

Matches are distributed among these distances:
  15    3  0.09
  16   32  0.91

ACGTcount: A:0.40, C:0.23, G:0.08, T:0.28


Consensus pattern (16 bp):   
GCATACATACATACAT

Done.