Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02501.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:960 original size:10 final size:10

Alignment explanation


    Indices: 945--969  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        935 GCGGCTTTGA

                      
        945 TTTTTGATAT
          1 TTTTTGATAT

                      
        955 TTTTTGATAT
          1 TTTTTGATAT

                 
        965 TTTTT
          1 TTTTT

        970 TATGTATTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76


Consensus pattern (10 bp):   
TTTTTGATAT
Done.