Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02510.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2110
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29


Found at i:134 original size:14 final size:14

Alignment explanation


    Indices: 115--144  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        105 AACAATTATC

                   *      
        115 TTTAATTTTGGGTT
          1 TTTAATTCTGGGTT

                          
        129 TTTAATTCTGGGTT
          1 TTTAATTCTGGGTT

              
        143 TT
          1 TT

        145 ATTTGAATTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.13, C:0.03, G:0.20, T:0.63


Consensus pattern (14 bp):   
TTTAATTCTGGGTT
Done.