Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02534.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3401
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29


Found at i:64 original size:6 final size:6

Alignment explanation


    Indices: 23--61  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

         13 ACTAAAAAAA

                                                  *      
         23 ATACAT ATACAT ATACAT ATACAT ATACAT ATATAT ATA
          1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATA

         62 TATGCATTTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36


Consensus pattern (6 bp):   
ATACAT
Done.