Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g02541.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3269
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Found at i:1308 original size:172 final size:172
Alignment explanation
Indices: 1022--1365 Score: 661
Period size: 172 Copynumber: 2.0 Consensus size: 172
1012 ATTGGAACTA
1022 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
*
1087 ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
*
1152 TTTGAAGGTATACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
1194 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
*
1259 ATGTTTCGTTTTGATGGGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
1324 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
1366 CACTAGAGGT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
172 169 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (172 bp):
GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
Done.