Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02553.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25


Found at i:1182 original size:30 final size:30

Alignment explanation


    Indices: 1086--1172  Score: 138
    Period size: 30  Copynumber: 2.9  Consensus size: 30

       1076 ATCGACCGCA

                *                         
       1086 GGGAGAAACCAAGGAAAAGCACCGATACCC
          1 GGGAAAAACCAAGGAAAAGCACCGATACCC

                *  *                      
       1116 GGGACAAGCCAAGGAAAAGCACCGATACCC
          1 GGGAAAAACCAAGGAAAAGCACCGATACCC

                                 *     
       1146 GGGAAAAACCAAGGAAAAGCATCGATA
          1 GGGAAAAACCAAGGAAAAGCACCGATA

       1173 GGCCTGAAAA


Statistics
Matches: 52,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   52  1.00

ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05


Consensus pattern (30 bp):   
GGGAAAAACCAAGGAAAAGCACCGATACCC
Done.