Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02338.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 527
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.30


Found at i:342 original size:21 final size:18

Alignment explanation


    Indices: 305--339  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        295 GAAGAAAGAT

                              
        305 GGTGGGAAGAAAGATGAA
          1 GGTGGGAAGAAAGATGAA

                       *     
        323 GGTGGGAAGAAGGATGA
          1 GGTGGGAAGAAAGATGA

        340 TGATAATAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11


Consensus pattern (18 bp):   
GGTGGGAAGAAAGATGAA
Done.