Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02339.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2065
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:101 original size:22 final size:23

Alignment explanation


    Indices: 76--122  Score: 60
    Period size: 22  Copynumber: 2.1  Consensus size: 23

         66 TCCCTTAACA

                       *           
         76 CTCACTCTCTCTTTC-ACTTCAC
          1 CTCACTCTCTCATTCTACTTCAC

                *           *      
         98 CTCATTCTCTCATTCTTCTTCAC
          1 CTCACTCTCTCATTCTACTTCAC

              
        121 CT
          1 CT

        123 AATATTCTTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  22   13  0.62
  23    8  0.38

ACGTcount: A:0.13, C:0.43, G:0.00, T:0.45


Consensus pattern (23 bp):   
CTCACTCTCTCATTCTACTTCAC
Done.