Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02581.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27


Found at i:235 original size:6 final size:6

Alignment explanation


    Indices: 224--272  Score: 62
    Period size: 6  Copynumber: 8.2  Consensus size: 6

        214 ATTTTGGGCT

                             *      *               *      *       
        224 CTCCGA CTCCGA CTCTGA CTCTGA CTCCGA CTCCGG CTCCGG CTCCGA
          1 CTCCGA CTCCGA CTCCGA CTCCGA CTCCGA CTCCGA CTCCGA CTCCGA

             
        272 C
          1 C

        273 GCCGCCTTCC


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.12, C:0.47, G:0.20, T:0.20


Consensus pattern (6 bp):   
CTCCGA

Done.