Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02345.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4527
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:126 original size:6 final size:6

Alignment explanation


    Indices: 117--147  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        107 AGAAACAGAA

                                                
        117 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G
          1 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G

        148 TTATGATTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32


Consensus pattern (6 bp):   
GAGTTG

Found at i:1386 original size:42 final size:42

Alignment explanation


    Indices: 1327--1411  Score: 170
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1317 TCCTTCTGCA

                                                      
       1327 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
          1 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT

                                                      
       1369 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
          1 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT

             
       1411 T
          1 T

       1412 CTGTCTCTAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.42, C:0.16, G:0.09, T:0.32


Consensus pattern (42 bp):   
TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
Done.