Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02599.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4440
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:4171 original size:13 final size:13

Alignment explanation


    Indices: 4153--4186  Score: 59
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       4143 CACTTCGGAG

                         
       4153 CGTGTGCTCAAGC
          1 CGTGTGCTCAAGC

                         
       4166 CGTGTGCTCAAGC
          1 CGTGTGCTCAAGC

                    
       4179 CGGTGTGC
          1 C-GTGTGC

       4187 CCCTTTGATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   14  0.70
  14    6  0.30

ACGTcount: A:0.12, C:0.29, G:0.35, T:0.24


Consensus pattern (13 bp):   
CGTGTGCTCAAGC
Done.