Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g02601.P18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5040
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Found at i:1649 original size:21 final size:21
Alignment explanation
Indices: 1623--1665 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
1613 TATCGGTGGA
1623 CTTTTCGGAATTTACAATGCG
1 CTTTTCGGAATTTACAATGCG
*
1644 CTTTTCTGAATTTACAATGCG
1 CTTTTCGGAATTTACAATGCG
1665 C
1 C
1666 GTAATTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (21 bp):
CTTTTCGGAATTTACAATGCG
Found at i:2312 original size:90 final size:90
Alignment explanation
Indices: 2205--2386 Score: 346
Period size: 90 Copynumber: 2.0 Consensus size: 90
2195 TCTGACCATT
*
2205 TCATTTAGGTTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
2270 TTTTAGATTGTTGAAATTGATCTGA
66 TTTTAGATTGTTGAAATTGATCTGA
2295 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
*
2360 TTTTAGATTGTTGATATTGATCTGA
66 TTTTAGATTGTTGAAATTGATCTGA
2385 TC
1 TC
2387 TAGGACCTTA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (90 bp):
TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
TTTTAGATTGTTGAAATTGATCTGA
Done.