Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00270.F10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3009
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1380 original size:24 final size:24

Alignment explanation


    Indices: 1353--1399  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1343 TCCGCCCAGT

                                    
       1353 CCAAAGAATATGTCACCCTCTTTA
          1 CCAAAGAATATGTCACCCTCTTTA

                                   
       1377 CCAAAGAATATGTCACCCTCTTT
          1 CCAAAGAATATGTCACCCTCTTT

       1400 CATGGAAACA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.32, C:0.30, G:0.09, T:0.30


Consensus pattern (24 bp):   
CCAAAGAATATGTCACCCTCTTTA
Done.