Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02345.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5271
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35


Found at i:189 original size:6 final size:6

Alignment explanation


    Indices: 180--210  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        170 AGAAACAGAA

                                                
        180 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G
          1 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G

        211 TTATGATTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32


Consensus pattern (6 bp):   
GAGTTG

Found at i:1449 original size:42 final size:42

Alignment explanation


    Indices: 1390--1474  Score: 170
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1380 TCCTTCTGCA

                                                      
       1390 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
          1 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT

                                                      
       1432 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
          1 TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT

             
       1474 T
          1 T

       1475 CTGTCTCTAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.42, C:0.16, G:0.09, T:0.32


Consensus pattern (42 bp):   
TAGATTCATACACTCTTACAGATAGCTCAAATTAGAAATAAT
Done.