Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02601.P28

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7060
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38


Found at i:3669 original size:21 final size:21

Alignment explanation


    Indices: 3643--3685  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3633 TATCGGTGGA

                                 
       3643 CTTTTCGGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

                  *              
       3664 CTTTTCTGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

             
       3685 C
          1 C

       3686 GTAATTATTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40


Consensus pattern (21 bp):   
CTTTTCGGAATTTACAATGCG

Found at i:4332 original size:90 final size:90

Alignment explanation


    Indices: 4225--4406  Score: 346
    Period size: 90  Copynumber: 2.0  Consensus size: 90

       4215 TCTGACCATT

                    *                                                        
       4225 TCATTTAGGTTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                                     
       4290 TTTTAGATTGTTGAAATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

                                                                             
       4315 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                          *          
       4380 TTTTAGATTGTTGATATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

              
       4405 TC
          1 TC

       4407 TAGGACCTTA


Statistics
Matches: 90,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  90   90  1.00

ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47


Consensus pattern (90 bp):   
TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
TTTTAGATTGTTGAAATTGATCTGA
Done.