Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02601.P39

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5877
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39


Found at i:2486 original size:21 final size:21

Alignment explanation


    Indices: 2460--2502  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2450 TATCGGTGGA

                                 
       2460 CTTTTCGGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

                  *              
       2481 CTTTTCTGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

             
       2502 C
          1 C

       2503 GTAATTATTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40


Consensus pattern (21 bp):   
CTTTTCGGAATTTACAATGCG

Found at i:3149 original size:90 final size:90

Alignment explanation


    Indices: 3042--3223  Score: 346
    Period size: 90  Copynumber: 2.0  Consensus size: 90

       3032 TCTGACCATT

                    *                                                        
       3042 TCATTTAGGTTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                                     
       3107 TTTTAGATTGTTGAAATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

                                                                             
       3132 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                          *          
       3197 TTTTAGATTGTTGATATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

              
       3222 TC
          1 TC

       3224 TAGGACCTTA


Statistics
Matches: 90,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  90   90  1.00

ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47


Consensus pattern (90 bp):   
TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
TTTTAGATTGTTGAAATTGATCTGA
Done.