Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02601.P41

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4935
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38


Found at i:2335 original size:21 final size:21

Alignment explanation


    Indices: 2309--2351  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2299 TATCGGTGGA

                                 
       2309 CTTTTCGGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

                  *              
       2330 CTTTTCTGAATTTACAATGCG
          1 CTTTTCGGAATTTACAATGCG

             
       2351 C
          1 C

       2352 GTAATTATTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40


Consensus pattern (21 bp):   
CTTTTCGGAATTTACAATGCG
Done.