Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g02601.P44
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4922
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Found at i:1531 original size:21 final size:21
Alignment explanation
Indices: 1505--1547 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
1495 TATCGGTGGA
1505 CTTTTCGGAATTTACAATGCG
1 CTTTTCGGAATTTACAATGCG
*
1526 CTTTTCTGAATTTACAATGCG
1 CTTTTCGGAATTTACAATGCG
1547 C
1 C
1548 GTAATTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (21 bp):
CTTTTCGGAATTTACAATGCG
Found at i:2194 original size:90 final size:90
Alignment explanation
Indices: 2087--2268 Score: 346
Period size: 90 Copynumber: 2.0 Consensus size: 90
2077 TCTGACCATT
*
2087 TCATTTAGGTTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
2152 TTTTAGATTGTTGAAATTGATCTGA
66 TTTTAGATTGTTGAAATTGATCTGA
2177 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
*
2242 TTTTAGATTGTTGATATTGATCTGA
66 TTTTAGATTGTTGAAATTGATCTGA
2267 TC
1 TC
2269 TAGGACCTTA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (90 bp):
TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
TTTTAGATTGTTGAAATTGATCTGA
Done.