Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g02602.R2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3372
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:1605 original size:78 final size:78

Alignment explanation


    Indices: 1476--1626  Score: 223
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1466 CTCATATTCT

                                     *        *                         *    
       1476 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCGTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1541 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                                         *  *          *                *    
       1554 ACCATTAAA-CGCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGAT
          1 ACCATTAAACCG-TGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGAT

                     
       1618 CACCATGGA
         65 CACCATGGA

       1627 CTTTGTGTAC


Statistics
Matches: 65,  Mismatches: 7, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  77    2  0.03
  78   63  0.97

ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Consensus pattern (78 bp):   
ACCATTAAACCGTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.