Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00026.M1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3450
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Found at i:2540 original size:2 final size:2
Alignment explanation
Indices: 2535--2563 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2525 TATATATATC
2535 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
2564 ATTCAAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:3211 original size:80 final size:80
Alignment explanation
Indices: 3078--3237 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
3068 GATCGTTTCA
3078 AGTTTAGGTCAATTTGAATTTAAGGTAAATTTGAGTTCAAGTTATTGAGTTTTCATGGTCAAATC
1 AGTTTAGGTCAATTTGAATTTAAGGTAAATTTGAGTTCAAGTTATTGAGTTTTCATGGTCAAATC
3143 AAGTTGGATCAAATT
66 AAGTTGGATCAAATT
3158 AGTTTAGGTCAATTTGAATTTAAGGTAAATTTGAGTTCAAGTTATTGAGTTTTCATGGTCAAATC
1 AGTTTAGGTCAATTTGAATTTAAGGTAAATTTGAGTTCAAGTTATTGAGTTTTCATGGTCAAATC
3223 AAGTTGGATCAAATT
66 AAGTTGGATCAAATT
3238 CGGGTTAATC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (80 bp):
AGTTTAGGTCAATTTGAATTTAAGGTAAATTTGAGTTCAAGTTATTGAGTTTTCATGGTCAAATC
AAGTTGGATCAAATT
Done.