Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00038.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2665
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:1443 original size:18 final size:18

Alignment explanation


    Indices: 1416--1451  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1406 TACTCGAGCC

                              
       1416 GGTTCAAACAGCGGTCCG
          1 GGTTCAAACAGCGGTCCG

                 *            
       1434 GGTTCGAACAGCGGTCCG
          1 GGTTCAAACAGCGGTCCG

       1452 CCATCAAGGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17


Consensus pattern (18 bp):   
GGTTCAAACAGCGGTCCG
Done.