Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00050.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3503
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:3252 original size:62 final size:61

Alignment explanation


    Indices: 3176--3299  Score: 221
    Period size: 62  Copynumber: 2.0  Consensus size: 61

       3166 GAACTGTGCA

                                                                          
       3176 AAAGACATTAATAGAGTCTGCAATCTGCATGCTGTAATGGGGGAAGAGGCAATCGGTCGACT
          1 AAAGACATTAATAGAGTCTGCAATCTGCATGCTGTAAT-GGGGAAGAGGCAATCGGTCGACT

                                                         *           *   
       3238 AAAGACATTAATAGAGTCTGCAATCTGCATGCTGTAATGGGGAAGCGGCAATCGGTCTACT
          1 AAAGACATTAATAGAGTCTGCAATCTGCATGCTGTAATGGGGAAGAGGCAATCGGTCGACT

             
       3299 A
          1 A

       3300 CTGAAGCAGT


Statistics
Matches: 60,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  61   22  0.37
  62   38  0.63

ACGTcount: A:0.32, C:0.17, G:0.27, T:0.23


Consensus pattern (61 bp):   
AAAGACATTAATAGAGTCTGCAATCTGCATGCTGTAATGGGGAAGAGGCAATCGGTCGACT
Done.