Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00052.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2605
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:499 original size:21 final size:23

Alignment explanation


    Indices: 473--514  Score: 61
    Period size: 21  Copynumber: 1.9  Consensus size: 23

        463 ACAAGCTCAC

                                   
        473 AGGTTC-TGTCCCT-GCTTCATT
          1 AGGTTCATGTCCCTCGCTTCATT

                        *        
        494 AGGTTCATGTCCTTCGCTTCA
          1 AGGTTCATGTCCCTCGCTTCA

        515 AACACTTGAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21    6  0.33
  22    6  0.33
  23    6  0.33

ACGTcount: A:0.12, C:0.29, G:0.19, T:0.40


Consensus pattern (23 bp):   
AGGTTCATGTCCCTCGCTTCATT

Found at i:1266 original size:18 final size:18

Alignment explanation


    Indices: 1243--1278  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1233 AACCCACCTT

                              
       1243 CATCAGGACATAAACATA
          1 CATCAGGACATAAACATA

                         *    
       1261 CATCAGGACATAACCATA
          1 CATCAGGACATAAACATA

       1279 GGAAACTTAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.47, C:0.25, G:0.11, T:0.17


Consensus pattern (18 bp):   
CATCAGGACATAAACATA
Done.