Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00055.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 415

Length: 693
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23


Found at i:79 original size:3 final size:3

Alignment explanation


    Indices: 73--100  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         63 TCGGCAGCAG

                                                 
         73 CCA CCA CCA CCA CCA CCA CCA CCA CCA C
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA C

        101 AAACAACCTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA

Done.