Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00067.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 439

Length: 732
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27


Found at i:431 original size:9 final size:9

Alignment explanation


    Indices: 419--455  Score: 65
    Period size: 9  Copynumber: 4.1  Consensus size: 9

        409 AGAGGACGAG

                     
        419 GGTGATGAT
          1 GGTGATGAT

                     
        428 GGTGATGAT
          1 GGTGATGAT

                *    
        437 GGTGGTGAT
          1 GGTGATGAT

                     
        446 GGTGATGAT
          1 GGTGATGAT

             
        455 G
          1 G

        456 ATGCTATTTC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.19, C:0.00, G:0.49, T:0.32


Consensus pattern (9 bp):   
GGTGATGAT

Done.