Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00074.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 438

Length: 731
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Found at i:644 original size:113 final size:107

Alignment explanation


    Indices: 470--731  Score: 314
    Period size: 109  Copynumber: 2.4  Consensus size: 107

        460 GGAAGAACTG

                                                                             
        470 AACCAGTTTATATGTAACAAAACTGGACATGTTT-AAGCTTTAGCTTGGTGTCTGTAATCTAAGC
          1 AACCAGTTTATATGT-A-AAAACTGGACATGTTTAAAGC-TTAGCTTGGTGTCTGTAATCTAAGC

              *                            *             *       
        534 TATAGCCTAGTGTTTTACCGTTGACTGTTTGTTTTAGTG-TT-ATTAGGACTA
         63 TAGAG-CTAGTGTTTTA-C--TG--T-TTT-ATTTAGTGTTTAATGAGGACTA

                      *                                                    * 
        585 AACCAGTTTACATGTAAAAACTGGACATGTTTAAAGCTTAGCTTGGTGTCTGTAATCTAAGCTGG
          1 AACCAGTTTATATGTAAAAACTGGACATGTTTAAAGCTTAGCTTGGTGTCTGTAATCTAAGCTAG

                *                                       
        650 AGCTTGTGTTTTACTGTTTTATTTAGTGTTTTAAATGAGGACTA
         66 AGCTAGTGTTTTACTGTTTTATTTAGTG-TTT-AATGAGGACTA

                             *      *             
        694 AACCAGTTTATATGTAAGAACTGGGCATGTTTAAAGCT
          1 AACCAGTTTATATGTAAAAACTGGACATGTTTAAAGCT


Statistics
Matches: 133,  Mismatches: 9, Indels: 16
        0.84            0.06        0.10

Matches are distributed among these distances:
 105    7  0.05
 106    3  0.02
 107    3  0.02
 109   46  0.35
 111    1  0.01
 112   10  0.08
 113   44  0.33
 114    5  0.04
 115   14  0.11

ACGTcount: A:0.28, C:0.13, G:0.21, T:0.39


Consensus pattern (107 bp):   
AACCAGTTTATATGTAAAAACTGGACATGTTTAAAGCTTAGCTTGGTGTCTGTAATCTAAGCTAG
AGCTAGTGTTTTACTGTTTTATTTAGTGTTTAATGAGGACTA
Done.