Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00078.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4129
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32


Found at i:3815 original size:13 final size:13

Alignment explanation


    Indices: 3797--3822  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3787 AATAATAAAG

                         
       3797 AAAAAAAGAGAAA
          1 AAAAAAAGAGAAA

                         
       3810 AAAAAAAGAGAAA
          1 AAAAAAAGAGAAA

       3823 GTGAATTAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (13 bp):   
AAAAAAAGAGAAA
Done.