Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00096.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8898
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:7731 original size:99 final size:99

Alignment explanation


    Indices: 7604--7895  Score: 404
    Period size: 99  Copynumber: 2.9  Consensus size: 99

       7594 GTCCGGCCTA

                     *                                                       
       7604 AAGGACTCAGCCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT
          1 AAGGACTCAACCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT

                                   *          
       7669 GAACTTCCAGAGTTGACATTAAATACTTTGTTTG
         66 GAACTTCCAGAGTTGACATTAAAGACTTTGTTTG

                  *         *                                                
       7703 AAGGACGCAACCACAAAGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT
          1 AAGGACTCAACCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT

                                              
       7768 GAACTTCCAGAGTTGACATTAAAGACTTTGTTTG
         66 GAACTTCCAGAGTTGACATTAAAGACTTTGTTTG

                     * * **       *  *     *    *  *       *   **     *      
       7802 AAGGACTCATCAATGAGGAAAGGCACACATCGGCATGCTATCAGTTAGAGGCGTTAAGGTTGTCT
          1 AAGGACTCAACCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT

            *           * *              
       7867 CAACTTCCAGAGCTAACATTAAAGACTTT
         66 GAACTTCCAGAGTTGACATTAAAGACTTT

       7896 AGAGCCATTT


Statistics
Matches: 171,  Mismatches: 22, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  99  171  1.00

ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26


Consensus pattern (99 bp):   
AAGGACTCAACCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCTTGTCT
GAACTTCCAGAGTTGACATTAAAGACTTTGTTTG
Done.