Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00099.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4885
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:3988 original size:99 final size:99

Alignment explanation


    Indices: 3814--4007  Score: 253
    Period size: 99  Copynumber: 2.0  Consensus size: 99

       3804 AAATAGTCCG

                            *             *          *  *                    
       3814 GTCTGAAGGACTCAGCCACAAGGAAAGACATACATCAGCATTCTCTCAGTTAAAGGAATTAAGCT
          1 GTCTGAAGGACTCAGCAACAAGGAAAGACAGACATCAGCATGCTATCAGTTAAAGGAATTAAGCT

                 *           * *              
       3879 TGTCTGAACTTCCAGAGTTGACATTAAAGATTTT
         66 TGTCTCAACTTCCAGAGCTAACATTAAAGATTTT

                          *    *       *        *               *   **     * 
       3913 GTCTGAAGGACTCATCAACGAGGAAAGGCAGACATCGGCATGCTATCAGTTAGAGGTGTTAAGGT
          1 GTCTGAAGGACTCAGCAACAAGGAAAGACAGACATCAGCATGCTATCAGTTAAAGGAATTAAGCT

                                          
       3978 TGTCTCAACTTCCAGAGCTAACATTAAAGA
         66 TGTCTCAACTTCCAGAGCTAACATTAAAGA

       4008 CTTTAGAGCC


Statistics
Matches: 80,  Mismatches: 15, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  99   80  1.00

ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25


Consensus pattern (99 bp):   
GTCTGAAGGACTCAGCAACAAGGAAAGACAGACATCAGCATGCTATCAGTTAAAGGAATTAAGCT
TGTCTCAACTTCCAGAGCTAACATTAAAGATTTT
Done.