Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00113.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3123
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33


Found at i:426 original size:51 final size:51

Alignment explanation


    Indices: 350--455  Score: 203
    Period size: 51  Copynumber: 2.1  Consensus size: 51

        340 GTTCGATTCT

                                                               
        350 GAAATTGACCACCAAACCATTATAAAGAAAGTTAATTATAATAATTTTTCA
          1 GAAATTGACCACCAAACCATTATAAAGAAAGTTAATTATAATAATTTTTCA

                                          *                    
        401 GAAATTGACCACCAAACCATTATAAAGAAATTTAATTATAATAATTTTTCA
          1 GAAATTGACCACCAAACCATTATAAAGAAAGTTAATTATAATAATTTTTCA

                
        452 GAAA
          1 GAAA

        456 GATCCTTTCT


Statistics
Matches: 54,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   54  1.00

ACGTcount: A:0.48, C:0.13, G:0.08, T:0.31


Consensus pattern (51 bp):   
GAAATTGACCACCAAACCATTATAAAGAAAGTTAATTATAATAATTTTTCA
Done.