Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00118.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4251
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34


Found at i:3058 original size:22 final size:22

Alignment explanation


    Indices: 3033--3077  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3023 CTTATTTCTG

                                  
       3033 TGGGTATTGTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

                                  
       3055 TGGGTATTGTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

             
       3077 T
          1 T

       3078 AGAACAAGTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.09, C:0.09, G:0.27, T:0.56


Consensus pattern (22 bp):   
TGGGTATTGTGGTTTTCATCTT
Done.