Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00119.C15

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6147
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37


Found at i:742 original size:20 final size:20

Alignment explanation


    Indices: 717--762  Score: 92
    Period size: 20  Copynumber: 2.3  Consensus size: 20

        707 GATATATCCA

                                
        717 TTTGGTGAAAATACTCTGAT
          1 TTTGGTGAAAATACTCTGAT

                                
        737 TTTGGTGAAAATACTCTGAT
          1 TTTGGTGAAAATACTCTGAT

                  
        757 TTTGGT
          1 TTTGGT

        763 TAAAGATAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   26  1.00

ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43


Consensus pattern (20 bp):   
TTTGGTGAAAATACTCTGAT
Done.