Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00121.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7342
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:1700 original size:16 final size:16

Alignment explanation


    Indices: 1679--1709  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1669 ATTTGGCTTA

                            
       1679 CTGTTTCCCTCTTTTT
          1 CTGTTTCCCTCTTTTT

                  *        
       1695 CTGTTTTCCTCTTTT
          1 CTGTTTCCCTCTTTT

       1710 GTATATATTA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.00, C:0.29, G:0.06, T:0.65


Consensus pattern (16 bp):   
CTGTTTCCCTCTTTTT

Found at i:4192 original size:21 final size:21

Alignment explanation


    Indices: 4153--4192  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4143 TTTATTTAAA

                       *         
       4153 AATATAAATGATATAGAATAT
          1 AATATAAATGAAATAGAATAT

                          *    
       4174 AATATAAATGAAATGGAAT
          1 AATATAAATGAAATAGAAT

       4193 TACTGATAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30


Consensus pattern (21 bp):   
AATATAAATGAAATAGAATAT
Done.