Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00121.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6404
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30


Found at i:3254 original size:21 final size:21

Alignment explanation


    Indices: 3215--3254  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3205 TTTATTTAAA

                       *         
       3215 AATATAAATGATATAGAATAT
          1 AATATAAATGAAATAGAATAT

                          *    
       3236 AATATAAATGAAATGGAAT
          1 AATATAAATGAAATAGAAT

       3255 TACTGATAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30


Consensus pattern (21 bp):   
AATATAAATGAAATAGAATAT
Done.