Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00126.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3475
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:12 original size:3 final size:3

Alignment explanation


    Indices: 5--36  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

          1 ATGG

                                             *        
          5 CTT CTT CTT CTT CTT CTT CTT CTT CAT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT

         37 ACTCTAATGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.03, C:0.34, G:0.00, T:0.62


Consensus pattern (3 bp):   
CTT

Found at i:2717 original size:147 final size:147

Alignment explanation


    Indices: 2499--2895  Score: 514
    Period size: 147  Copynumber: 2.7  Consensus size: 147

       2489 CATATTGCAA

                                         *                  *            *   
       2499 GAATTTAAGGAAGAT-TCCTAATCTTTC-TGAAGCCATCAACCTTGAACTCCTT-TGTTGCGTTG
          1 GAATTTAAGGAAGATAT-CTAATCTTTCAAG-AGCCATCAACCTTGAAATCCTTGT-TTGCATTG

            *   *               *               *                            
       2561 GCTGTGAAAGTTTGGTTGAATTTTGGAATGAAGATGGTCATACAGGCCTTGTTAATTTAAGGAAA
         63 ACTGCGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATACAGGCCTTGTTAATTTAAGGAAA

                      * *       
       2626 ATTAACTTTGGGGGGTGCGT
        128 ATTAACTTTGAGCGGTGCGT

                                                                    *  *     
       2646 GAATTTAAGGAAGATATCTAATCTTTCAAGAGCCATCAACCTTGAAATCCTTGTTTTCACTGACT
          1 GAATTTAAGGAAGATATCTAATCTTTCAAGAGCCATCAACCTTGAAATCCTTGTTTGCATTGACT

                                                   **                  *     
       2711 GCGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATATGGGCCTTGTTAATTTAAGGGAAATT
         66 GCGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATACAGGCCTTGTTAATTTAAGGAAAATT

            * *              
       2776 TATTTTGAGCGGTGCGT
        131 AACTTTGAGCGGTGCGT

                            *               *          *         *    *  *   
       2793 GAATTTAAGGAAGATACCTAATCTTTCAAGAGTCATC-ACCTTAAAATCCTTGATTGCTTTAACT
          1 GAATTTAAGGAAGATATCTAATCTTTCAAGAGCCATCAACCTTGAAATCCTTGTTTGCATTGACT

                     ***                           
       2857 GCGAAAGTTCAATTGAACTTTGGAATGAAGATGATCATA
         66 GCGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATA

       2896 TGGACCAGTG


Statistics
Matches: 220,  Mismatches: 27, Indels: 7
        0.87            0.11        0.03

Matches are distributed among these distances:
 146   57  0.26
 147  160  0.73
 148    3  0.01

ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Consensus pattern (147 bp):   
GAATTTAAGGAAGATATCTAATCTTTCAAGAGCCATCAACCTTGAAATCCTTGTTTGCATTGACT
GCGAAAGTTTGGTTGAACTTTGGAATGAAGATGATCATACAGGCCTTGTTAATTTAAGGAAAATT
AACTTTGAGCGGTGCGT
Done.