Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00126.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5215
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:12 original size:3 final size:3

Alignment explanation


    Indices: 5--36  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

          1 ATGG

                                             *        
          5 CTT CTT CTT CTT CTT CTT CTT CTT CAT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT

         37 ACTCTAATGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.03, C:0.34, G:0.00, T:0.62


Consensus pattern (3 bp):   
CTT

Done.